HL_9F58_014

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_014 not in the Motif Atlas

Homologous match to HL_8P9A_122

Geometric discrepancy: 0.0623

The information below is about HL_8P9A_122

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9F58|1|a|A|357
9F58|1|a|G|358
9F58|1|a|U|359
9F58|1|a|G|360
9F58|1|a|A|361
9F58|1|a|U|362

Current chains

Chain a

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L4-A

Chain V

60S ribosomal protein L37-A

Chain X

60S ribosomal protein L39