HL_9F58_024

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9F58|1|a|U|879, 9F58|1|a|A|883, 9F58|1|a|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_024 not in the Motif Atlas

Homologous match to HL_8CRE_019

Geometric discrepancy: 0.069

The information below is about HL_8CRE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

9F58|1|a|A|876
9F58|1|a|C|877
9F58|1|a|G|878
9F58|1|a|U|879
9F58|1|a|G|880
9F58|1|a|C|881
9F58|1|a|A|882
9F58|1|a|A|883
9F58|1|a|A|884
9F58|1|a|U|885

Current chains

Chain a

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L37-A

Chain d

60S ribosomal protein L3

Chain q

60S ribosomal protein L17-A