HL_9F58_025

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9F58|1|a|A|913, 9F58|1|a|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_025 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0569

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9F58|1|a|G|910
9F58|1|a|C|911
9F58|1|a|G|912
9F58|1|a|A|913
9F58|1|a|A|914
9F58|1|a|A|915
9F58|1|a|G|916
9F58|1|a|A|917
9F58|1|a|C|918

Current chains

Chain a

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L37-A

Chain c

60S ribosomal protein L2-A

Chain o

60S ribosomal protein L15-A