HL_9F58_036

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_036 not in the Motif Atlas

Homologous match to HL_8CRE_032

Geometric discrepancy: 0.0717

The information below is about HL_8CRE_032

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9F58|1|a|G|1544
9F58|1|a|A|1545
9F58|1|a|A|1546
9F58|1|a|G|1547
9F58|1|a|C|1548
9F58|1|a|U|1549

Current chains

Chain a

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L37-A

Chain o

60S ribosomal protein L15-A