HL_9F58_041

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

9F58|1|a|C|1762, 9F58|1|a|U|1765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_041 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.3485

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9F58|1|a|C|1759
9F58|1|a|A|1760
9F58|1|a|C|1761
9F58|1|a|C|1762
9F58|1|a|U|1763
9F58|1|a|U|1764
9F58|1|a|U|1765
9F58|1|a|G|1766

Current chains

Chain a

25S rRNA

Nearby chains

Chain s

60S ribosomal protein L19-A

Chain v

60S ribosomal protein L22-A