HL_9F58_067

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_067 not in the Motif Atlas

Homologous match to HL_8P9A_177

Geometric discrepancy: 0.1001

The information below is about HL_8P9A_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9F58|1|a|U|3068
9F58|1|a|G|3069
9F58|1|a|A|3070
9F58|1|a|U|3071
9F58|1|a|C|3072
9F58|1|a|A|3073

Current chains

Chain a

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L31-A

Chain s

60S ribosomal protein L19-A

Chain v

60S ribosomal protein L22-A