HL_9F58_071

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUACGAC

Length

9 nucleotides

Bulged bases

9F58|1|a|U|3304

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F58_071 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0713

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F58|1|a|G|3303
9F58|1|a|U|3304
9F58|1|a|A|3305
9F58|1|a|U|3306
9F58|1|a|A|3307
9F58|1|a|C|3308
9F58|1|a|G|3309
9F58|1|a|A|3310
9F58|1|a|C|3311

Current chains

Chain a

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L31-A

Chain d

60S ribosomal protein L3

Chain q

60S ribosomal protein L17-A