HL_9F9S_003
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_003 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.1179
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9F9S|1|CP|G|53
9F9S|1|CP|U|54
9F9S|1|CP|U|55
9F9S|1|CP|C|56
9F9S|1|CP|A|57
9F9S|1|CP|A|58
9F9S|1|CP|G|59
9F9S|1|CP|U|60
9F9S|1|CP|C|61
Current chains
- Chain CP
- tRNA P-site, stalled
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LF
- 60S ribosomal protein L11-A
- Chain Lc
- 60S ribosomal protein L42-A
Coloring options: