HL_9F9S_009
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUUCAAAUCC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_009 not in the Motif Atlas
- Homologous match to HL_4TUE_218
- Geometric discrepancy: 0.306
- The information below is about HL_4TUE_218
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_23827.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|DQ|G|53
9F9S|1|DQ|G|54
9F9S|1|DQ|U|55
9F9S|1|DQ|U|56
9F9S|1|DQ|C|57
9F9S|1|DQ|A|58
9F9S|1|DQ|A|59
9F9S|1|DQ|A|60
9F9S|1|DQ|U|61
9F9S|1|DQ|C|62
9F9S|1|DQ|C|63
Current chains
- Chain DQ
- tRNA
Nearby chains
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Mc
- 60S ribosomal protein L42-A
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