HL_9F9S_010
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAAGCAUA
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|L1|A|40, 9F9S|1|L1|A|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_010 not in the Motif Atlas
- Homologous match to HL_8P9A_113
- Geometric discrepancy: 0.0745
- The information below is about HL_8P9A_113
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48677.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
9F9S|1|L1|U|38
9F9S|1|L1|A|39
9F9S|1|L1|A|40
9F9S|1|L1|G|41
9F9S|1|L1|C|42
9F9S|1|L1|A|43
9F9S|1|L1|U|44
9F9S|1|L1|A|45
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lq
- 60S ribosomal protein L28
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