HL_9F9S_017
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 9F9S|1|L1|G|283, 9F9S|1|L1|A|284, 9F9S|1|L1|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_017 not in the Motif Atlas
- Homologous match to HL_8C3A_008
- Geometric discrepancy: 0.0715
- The information below is about HL_8C3A_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77436.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9F9S|1|L1|U|278
9F9S|1|L1|U|279
9F9S|1|L1|U|280
9F9S|1|L1|G|281
9F9S|1|L1|G|282
9F9S|1|L1|G|283
9F9S|1|L1|A|284
9F9S|1|L1|A|285
9F9S|1|L1|U|286
9F9S|1|L1|G|287
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lq
- 60S ribosomal protein L28
Coloring options: