HL_9F9S_028
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- 9F9S|1|L1|A|846
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_028 not in the Motif Atlas
- Geometric match to HL_2CZJ_007
- Geometric discrepancy: 0.1821
- The information below is about HL_2CZJ_007
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_23696.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 8
Unit IDs
9F9S|1|L1|G|844
9F9S|1|L1|G|845
9F9S|1|L1|A|846
9F9S|1|L1|A|847
9F9S|1|L1|A|848
9F9S|1|L1|C|849
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain Lb
- 60S ribosomal protein L43-A
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Sl
- 40S ribosomal protein S11-A
- Chain Sn
- 40S ribosomal protein S13
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