HL_9F9S_041

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9F9S|1|L1|G|1507, 9F9S|1|L1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_041 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.0745

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

9F9S|1|L1|A|1506
9F9S|1|L1|G|1507
9F9S|1|L1|C|1508
9F9S|1|L1|A|1509
9F9S|1|L1|G|1510
9F9S|1|L1|U|1511
9F9S|1|L1|U|1512

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LK

60S ribosomal protein L17-A

Chain LM

60S ribosomal protein L19-A

Chain Lf

60S ribosomal protein L39