HL_9F9S_048

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

9F9S|1|L1|C|1762, 9F9S|1|L1|U|1763, 9F9S|1|L1|U|1764, 9F9S|1|L1|U|1765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_048 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.4514

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68791.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9F9S|1|L1|C|1759
9F9S|1|L1|A|1760
9F9S|1|L1|C|1761
9F9S|1|L1|C|1762
9F9S|1|L1|U|1763
9F9S|1|L1|U|1764
9F9S|1|L1|U|1765
9F9S|1|L1|G|1766

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LM

60S ribosomal protein L19-A

Chain Lv

60S ribosomal protein L22-A