HL_9F9S_050
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|L1|C|1846, 9F9S|1|L1|G|1848, 9F9S|1|L1|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_050 not in the Motif Atlas
- Homologous match to HL_8P9A_152
- Geometric discrepancy: 0.0586
- The information below is about HL_8P9A_152
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28592.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9F9S|1|L1|C|1844
9F9S|1|L1|G|1845
9F9S|1|L1|C|1846
9F9S|1|L1|A|1847
9F9S|1|L1|G|1848
9F9S|1|L1|C|1849
9F9S|1|L1|A|1850
9F9S|1|L1|G|1851
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain CC
- Uncharacterized protein YEL057C
- Chain LK
- 60S ribosomal protein L17-A
- Chain Lf
- 60S ribosomal protein L39
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Ly
- 60S ribosomal protein L4-A
Coloring options: