HL_9F9S_052

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9F9S|1|L1|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_052 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0435

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9F9S|1|L1|C|1923
9F9S|1|L1|U|1924
9F9S|1|L1|U|1925
9F9S|1|L1|C|1926
9F9S|1|L1|G|1927
9F9S|1|L1|G|1928

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lb

60S ribosomal protein L43-A

Chain Ld

60S ribosomal protein L41-A

Chain S1

Small subunit ribosomal RNA; SSU rRNA