HL_9F9S_053

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

9F9S|1|L1|G|2111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_053 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.0873

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9F9S|1|L1|G|2110
9F9S|1|L1|G|2111
9F9S|1|L1|U|2112
9F9S|1|L1|A|2113
9F9S|1|L1|C|2114

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LM

60S ribosomal protein L19-A

Chain Lu

60S ribosomal protein L24-A

Chain S1

Small subunit ribosomal RNA; SSU rRNA