HL_9F9S_062

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

9F9S|1|L1|A|2637, 9F9S|1|L1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_062 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.0712

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

9F9S|1|L1|U|2633
9F9S|1|L1|U|2634
9F9S|1|L1|A|2635
9F9S|1|L1|A|2636
9F9S|1|L1|A|2637
9F9S|1|L1|C|2638
9F9S|1|L1|G|2639
9F9S|1|L1|A|2640
9F9S|1|L1|U|2641
9F9S|1|L1|A|2642
9F9S|1|L1|A|2643
9F9S|1|L1|C|2644
9F9S|1|L1|G|2645

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LE

60S ribosomal protein L10

Chain LO

60S ribosomal protein L21-A

Chain Lp

60S ribosomal protein L29