HL_9F9S_068

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_068 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1085

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F9S|1|L1|C|2840
9F9S|1|L1|G|2841
9F9S|1|L1|U|2842
9F9S|1|L1|U|2843
9F9S|1|L1|C|2844
9F9S|1|L1|A|2845
9F9S|1|L1|U|2846
9F9S|1|L1|A|2847
9F9S|1|L1|G|2848

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LE

60S ribosomal protein L10

Chain Le

Ubiquitin-60S ribosomal protein L40