HL_9F9S_069

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9F9S|1|L1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_069 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.0918

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9F9S|1|L1|A|2897
9F9S|1|L1|G|2898
9F9S|1|L1|C|2899
9F9S|1|L1|A|2900
9F9S|1|L1|G|2901
9F9S|1|L1|A|2902
9F9S|1|L1|A|2903
9F9S|1|L1|U|2904

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

60S ribosomal protein L9-A

Chain Le

Ubiquitin-60S ribosomal protein L40