HL_9F9S_091

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

9F9S|1|M1|U|210, 9F9S|1|M1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_091 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.0478

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9F9S|1|M1|C|208
9F9S|1|M1|A|209
9F9S|1|M1|U|210
9F9S|1|M1|A|211
9F9S|1|M1|G|212

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Ms

60S ribosomal protein L26-A

Chain My

60S ribosomal protein L4-A