HL_9F9S_092

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

9F9S|1|M1|G|218, 9F9S|1|M1|A|219, 9F9S|1|M1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_092 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0559

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

9F9S|1|M1|G|216
9F9S|1|M1|U|217
9F9S|1|M1|G|218
9F9S|1|M1|A|219
9F9S|1|M1|G|220
9F9S|1|M1|A|221
9F9S|1|M1|A|222
9F9S|1|M1|U|223
9F9S|1|M1|C|224

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain M2

5.8S ribosomal RNA; 5.8S rRNA

Chain Ms

60S ribosomal protein L26-A

Chain My

60S ribosomal protein L4-A