HL_9F9S_099

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

9F9S|1|M1|C|648

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_099 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0711

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9F9S|1|M1|U|640
9F9S|1|M1|C|641
9F9S|1|M1|U|642
9F9S|1|M1|U|643
9F9S|1|M1|G|644
9F9S|1|M1|1MA|645
9F9S|1|M1|A|646
9F9S|1|M1|A|647
9F9S|1|M1|C|648
9F9S|1|M1|A2M|649

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mm

60S ribosomal protein L32

Chain Mq

60S ribosomal protein L28

Chain Mx

60S ribosomal protein L3