HL_9F9S_106

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

9F9S|1|M1|A|913, 9F9S|1|M1|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_106 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0555

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79004.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9F9S|1|M1|G|910
9F9S|1|M1|C|911
9F9S|1|M1|G|912
9F9S|1|M1|A|913
9F9S|1|M1|A|914
9F9S|1|M1|A|915
9F9S|1|M1|G|916
9F9S|1|M1|A|917
9F9S|1|M1|C|918

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MI

60S ribosomal protein L15-A

Chain Mh

60S ribosomal protein L37-A

Chain Mw

60S ribosomal protein L2-A