HL_9F9S_107

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9F9S|1|M1|C|959, 9F9S|1|M1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_107 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.3697

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9F9S|1|M1|C|958
9F9S|1|M1|C|959
9F9S|1|M1|U|960
9F9S|1|M1|C|961
9F9S|1|M1|A|962
9F9S|1|M1|G|963

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mc

60S ribosomal protein L42-A

Chain Mp

60S ribosomal protein L29

Chain Mq

60S ribosomal protein L28