HL_9F9S_111
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAUGAAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_111 not in the Motif Atlas
- Homologous match to HL_8C3A_026
- Geometric discrepancy: 0.0621
- The information below is about HL_8C3A_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44398.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9F9S|1|M1|G|1148
9F9S|1|M1|G|1149
9F9S|1|M1|A|1150
9F9S|1|M1|U|1151
9F9S|1|M1|G|1152
9F9S|1|M1|A|1153
9F9S|1|M1|A|1154
9F9S|1|M1|C|1155
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M3
- 5S ribosomal RNA; 5S rRNA
- Chain MB
- 60S ribosomal protein L7-A
- Chain Ml
- 60S ribosomal protein L33-A
- Chain Mm
- 60S ribosomal protein L32
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