HL_9F9S_112

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9F9S|1|M1|A|1245

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_112 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3882

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9F9S|1|M1|C|1239
9F9S|1|M1|A|1240
9F9S|1|M1|U|1241
9F9S|1|M1|G|1242
9F9S|1|M1|G|1243
9F9S|1|M1|A|1244
9F9S|1|M1|A|1245
9F9S|1|M1|G|1246
9F9S|1|M1|U|1247
9F9S|1|M1|C|1248
9F9S|1|M1|G|1249

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain MP

60S ribosomal protein L12-A