HL_9F9S_114
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 9F9S|1|M1|G|1349, 9F9S|1|M1|A|1350, 9F9S|1|M1|U|1353, 9F9S|1|M1|G|1354, 9F9S|1|M1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_114 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.5864
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
9F9S|1|M1|U|1347
9F9S|1|M1|U|1348
9F9S|1|M1|G|1349
9F9S|1|M1|A|1350
9F9S|1|M1|U|1351
9F9S|1|M1|A|1352
9F9S|1|M1|U|1353
9F9S|1|M1|G|1354
9F9S|1|M1|A|1355
9F9S|1|M1|U|1356
9F9S|1|M1|G|1357
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MA
- 60S ribosomal protein L6-A
- Chain ML
- 60S ribosomal protein L18-A
- Chain Mm
- 60S ribosomal protein L32
- Chain My
- 60S ribosomal protein L4-A
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