HL_9F9S_119

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAUUUUAUGCAGG

Length

15 nucleotides

Bulged bases

9F9S|1|M1|U|1568, 9F9S|1|M1|U|1569, 9F9S|1|M1|U|1570, 9F9S|1|M1|A|1571, 9F9S|1|M1|U|1572

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_119 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.201

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9F9S|1|M1|C|1563
9F9S|1|M1|U|1564
9F9S|1|M1|G|1565
9F9S|1|M1|A|1566
9F9S|1|M1|U|1567
9F9S|1|M1|U|1568
9F9S|1|M1|U|1569
9F9S|1|M1|U|1570
9F9S|1|M1|A|1571
9F9S|1|M1|U|1572
9F9S|1|M1|G|1573
9F9S|1|M1|C|1574
9F9S|1|M1|A|1575
9F9S|1|M1|G|1576
9F9S|1|M1|G|1577

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain M2

5.8S ribosomal RNA; 5.8S rRNA

Chain Mt

60S ribosomal protein L25