HL_9F9S_130

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCUAAUU(1MA)AAA

Length

11 nucleotides

Bulged bases

9F9S|1|M1|A|2138, 9F9S|1|M1|A|2139, 9F9S|1|M1|U|2140, 9F9S|1|M1|A|2144

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_130 not in the Motif Atlas

Homologous match to HL_8P9A_157

Geometric discrepancy: 0.0686

The information below is about HL_8P9A_157

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87681.1

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F9S|1|M1|U|2135
9F9S|1|M1|C|2136
9F9S|1|M1|U|2137
9F9S|1|M1|A|2138
9F9S|1|M1|A|2139
9F9S|1|M1|U|2140
9F9S|1|M1|U|2141
9F9S|1|M1|1MA|2142
9F9S|1|M1|A|2143
9F9S|1|M1|A|2144
9F9S|1|M1|A|2145

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain Mh

60S ribosomal protein L37-A

Chain Mw

60S ribosomal protein L2-A