HL_9F9S_145
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_145 not in the Motif Atlas
- Homologous match to HL_8P9A_171
- Geometric discrepancy: 0.0682
- The information below is about HL_8P9A_171
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
9F9S|1|M1|C|2776
9F9S|1|M1|G|2777
9F9S|1|M1|G|2778
9F9S|1|M1|A|2779
9F9S|1|M1|A|2780
9F9S|1|M1|U|2781
9F9S|1|M1|U|2782
9F9S|1|M1|U|2783
9F9S|1|M1|G|2784
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MG
- 60S ribosomal protein L13-A
- Chain Mc
- 60S ribosomal protein L42-A
- Chain Mi
- 60S ribosomal protein L36-A
- Chain Mq
- 60S ribosomal protein L28
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