HL_9F9S_147
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGCAGAAU
- Length
- 8 nucleotides
- Bulged bases
- 9F9S|1|M1|G|2898
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_147 not in the Motif Atlas
- Homologous match to HL_8P9A_173
- Geometric discrepancy: 0.0713
- The information below is about HL_8P9A_173
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_46665.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9F9S|1|M1|A|2897
9F9S|1|M1|G|2898
9F9S|1|M1|C|2899
9F9S|1|M1|A|2900
9F9S|1|M1|G|2901
9F9S|1|M1|A|2902
9F9S|1|M1|A|2903
9F9S|1|M1|U|2904
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MD
- 60S ribosomal protein L9-A
- Chain Me
- Ubiquitin-60S ribosomal protein L40
Coloring options: