HL_9F9S_168

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9F9S|1|R1|U|232

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_168 not in the Motif Atlas

Homologous match to HL_8C3A_196

Geometric discrepancy: 0.4771

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

9F9S|1|R1|C|230
9F9S|1|R1|U|231
9F9S|1|R1|U|232
9F9S|1|R1|C|233
9F9S|1|R1|G|234
9F9S|1|R1|G|235

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains