HL_9F9S_171

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

9F9S|1|R1|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_171 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0644

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F9S|1|R1|G|330
9F9S|1|R1|A|331
9F9S|1|R1|U|332
9F9S|1|R1|A|333
9F9S|1|R1|G|334
9F9S|1|R1|U|335
9F9S|1|R1|G|336
9F9S|1|R1|G|337
9F9S|1|R1|C|338

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Ri

40S ribosomal protein S8-A

Chain Rl

40S ribosomal protein S11-A