HL_9F9S_176

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUCG

Length

6 nucleotides

Bulged bases

9F9S|1|R1|U|493

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_176 not in the Motif Atlas

Geometric match to HL_8C3A_198

Geometric discrepancy: 0.261

The information below is about HL_8C3A_198

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_46878.1

Basepair signature

cWW-F

Number of instances in this motif group

30

Unit IDs

9F9S|1|R1|C|491
9F9S|1|R1|A|492
9F9S|1|R1|U|493
9F9S|1|R1|U|494
9F9S|1|R1|C|495
9F9S|1|R1|G|496

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain CN

Multiprotein-bridging factor 1

Chain Rd

Small ribosomal subunit protein uS3