HL_9F9S_177

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_177 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.0986

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|R1|A|520
9F9S|1|R1|A|521
9F9S|1|R1|U|522
9F9S|1|R1|G|523
9F9S|1|R1|U|524
9F9S|1|R1|A|525
9F9S|1|R1|A|526
9F9S|1|R1|A|527
9F9S|1|R1|U|528
9F9S|1|R1|A|529
9F9S|1|R1|C|530
9F9S|1|R1|C|531
9F9S|1|R1|U|532

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Re

40S ribosomal protein S4-A

Chain Rj

40S ribosomal protein S9-A

Chain Ry

40S ribosomal protein S24-A