HL_9F9S_178

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_178 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0745

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9F9S|1|R1|C|569
9F9S|1|R1|A|570
9F9S|1|R1|G|571
9F9S|1|R1|C|572
9F9S|1|R1|C|573
9F9S|1|R1|G|574

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain CM

mRNA

Chain Rx

40S ribosomal protein S23-A