HL_9F9S_181

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAUUG

Length

7 nucleotides

Bulged bases

9F9S|1|R1|U|779, 9F9S|1|R1|U|781, 9F9S|1|R1|U|782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_181 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3764

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

9F9S|1|R1|C|777
9F9S|1|R1|G|778
9F9S|1|R1|U|779
9F9S|1|R1|A|780
9F9S|1|R1|U|781
9F9S|1|R1|U|782
9F9S|1|R1|G|783

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain LC

60S ribosomal protein L8-A

Chain Rj

40S ribosomal protein S9-A

Chain Ry

40S ribosomal protein S24-A

Chain Sb

40S ribosomal protein S1-A