HL_9F9S_186

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_186 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.3397

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61768.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9F9S|1|R1|U|1055
9F9S|1|R1|U|1056
9F9S|1|R1|U|1057
9F9S|1|R1|U|1058
9F9S|1|R1|U|1059
9F9S|1|R1|U|1060
9F9S|1|R1|A|1061
9F9S|1|R1|A|1062
9F9S|1|R1|U|1063
9F9S|1|R1|G|1064

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain RB

40S ribosomal protein S27-A

Chain Rb

40S ribosomal protein S1-A