HL_9F9S_188

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

9F9S|1|R1|C|1123

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_188 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1639

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9F9S|1|R1|C|1121
9F9S|1|R1|G|1122
9F9S|1|R1|C|1123
9F9S|1|R1|A|1124
9F9S|1|R1|A|1125
9F9S|1|R1|G|1126

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain M1

Large subunit ribosomal RNA; LSU rRNA

Chain Mb

60S ribosomal protein L43-A

Chain Md

60S ribosomal protein L41-A