HL_9F9S_192

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9F9S|1|R1|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_192 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.0986

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

18

Unit IDs

9F9S|1|R1|C|1309
9F9S|1|R1|U|1310
9F9S|1|R1|U|1311
9F9S|1|R1|A|1312
9F9S|1|R1|A|1313
9F9S|1|R1|U|1314
9F9S|1|R1|U|1315
9F9S|1|R1|G|1316

Current chains

Chain R1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Rr

40S ribosomal protein S17-A