HL_9F9S_202

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

9F9S|1|S1|C|191, 9F9S|1|S1|U|192, 9F9S|1|S1|U|193, 9F9S|1|S1|U|194

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_202 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3723

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

9F9S|1|S1|C|190
9F9S|1|S1|C|191
9F9S|1|S1|U|192
9F9S|1|S1|U|193
9F9S|1|S1|U|194
9F9S|1|S1|G|195

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Si

40S ribosomal protein S8-A