HL_9F9S_223

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

9F9S|1|S1|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_223 not in the Motif Atlas

Homologous match to HL_8P9A_215

Geometric discrepancy: 0.093

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9F9S|1|S1|G|1188
9F9S|1|S1|A|1189
9F9S|1|S1|C|1190
9F9S|1|S1|U|1191
9F9S|1|S1|C|1192
9F9S|1|S1|A|1193
9F9S|1|S1|A|1194
9F9S|1|S1|C|1195
9F9S|1|S1|A|1196
9F9S|1|S1|C|1197

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain SD

Small ribosomal subunit protein uS14A

Chain Sq

40S ribosomal protein S16-A

Chain Su

Small ribosomal subunit protein uS10