HL_9F9S_228

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9F9S_228 not in the Motif Atlas

Homologous match to HL_8P9A_220

Geometric discrepancy: 0.4236

The information below is about HL_8P9A_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9F9S|1|S1|U|1396
9F9S|1|S1|U|1397
9F9S|1|S1|U|1398
9F9S|1|S1|C|1399
9F9S|1|S1|A|1400
9F9S|1|S1|A|1401
9F9S|1|S1|G|1402

Current chains

Chain S1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)

Nearby chains

Chain Sr

40S ribosomal protein S17-B