HL_9F9S_230
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGUAAUUAUU
- Length
- 12 nucleotides
- Bulged bases
- 9F9S|1|S1|U|1557, 9F9S|1|S1|U|1558, 9F9S|1|S1|A|1559
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9F9S_230 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.1074
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9F9S|1|S1|A|1550
9F9S|1|S1|U|1551
9F9S|1|S1|U|1552
9F9S|1|S1|G|1553
9F9S|1|S1|U|1554
9F9S|1|S1|A|1555
9F9S|1|S1|A|1556
9F9S|1|S1|U|1557
9F9S|1|S1|U|1558
9F9S|1|S1|A|1559
9F9S|1|S1|U|1560
9F9S|1|S1|U|1561
Current chains
- Chain S1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)
Nearby chains
- Chain SD
- Small ribosomal subunit protein uS14A
- Chain Sp
- 40S ribosomal protein S15
- Chain Ss
- 40S ribosomal protein S18-A
- Chain St
- 40S ribosomal protein S19-A
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