HL_9FBV_046

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9FBV|1|a|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_046 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0552

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9FBV|1|a|A|382
9FBV|1|a|C|383
9FBV|1|a|A|384
9FBV|1|a|C|385
9FBV|1|a|G|386
9FBV|1|a|U|387
9FBV|1|a|G|388
9FBV|1|a|G|389
9FBV|1|a|U|390
9FBV|1|a|A|391
9FBV|1|a|U|392

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain w

Large ribosomal subunit protein bL28