3D structure

PDB id
9FBV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S Escherichia coli ribosome with P-site initiatior tRNA.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
U(1MG)(PSU)(5MU)GAAAAA
Length
10 nucleotides
Bulged bases
9FBV|1|a|A|751, 9FBV|1|a|A|752
QA status
Modified nucleotides: 1MG, PSU, 5MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FBV_056 not in the Motif Atlas
Homologous match to HL_5J7L_155
Geometric discrepancy: 0.04
The information below is about HL_5J7L_155
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

9FBV|1|a|U|744
9FBV|1|a|1MG|745
9FBV|1|a|PSU|746
9FBV|1|a|5MU|747
9FBV|1|a|G|748
9FBV|1|a|A|749
9FBV|1|a|A|750
9FBV|1|a|A|751
9FBV|1|a|A|752
9FBV|1|a|A|753

Current chains

Chain a
23S ribosomal RNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain d
Large ribosomal subunit protein uL3
Chain r
Large ribosomal subunit protein uL22
Chain z
Large ribosomal subunit protein bL32

Coloring options:


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