HL_9FIB_006

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FIB_006 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.063

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9FIB|1|B|A|320
9FIB|1|B|A|321
9FIB|1|B|C|322
9FIB|1|B|U|323
9FIB|1|B|G|324
9FIB|1|B|A|325
9FIB|1|B|G|326
9FIB|1|B|A|327
9FIB|1|B|C|328
9FIB|1|B|A|329
9FIB|1|B|C|330
9FIB|1|B|G|331
9FIB|1|B|G|332
9FIB|1|B|U|333

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20