HL_9FMD_004

3D structure

PDB id

9FMD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Integrative model of the human post-catalytic spliceosome (P-complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9FMD|1|6|C|11

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FMD_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2977

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

9FMD|1|6|C|8
9FMD|1|6|U|9
9FMD|1|6|U|10
9FMD|1|6|C|11
9FMD|1|6|G|12
9FMD|1|6|G|13

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain W

Pre-mRNA-processing factor 17