HL_9G06_006

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_006 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.063

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9G06|1|B|A|320
9G06|1|B|A|321
9G06|1|B|C|322
9G06|1|B|U|323
9G06|1|B|G|324
9G06|1|B|A|325
9G06|1|B|G|326
9G06|1|B|A|327
9G06|1|B|C|328
9G06|1|B|A|329
9G06|1|B|C|330
9G06|1|B|G|331
9G06|1|B|G|332
9G06|1|B|U|333

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20